Hi, While trying to install RforMassSpectrometry I get the following error (BiocManager was installed as described here: https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#installation).

Any help? Thx!

BiocManager::install("RforMassSpectrometry/RforMassSpectrometry") ........

Skipping 1 packages not available: MsCoreUtils
Installing 11 packages: S4Vectors, BiocParallel, ProtGenerics, IRanges, MsCoreUtils, futile.logger, snow, BH, lambda.r, futile.options, formatR
Installing packages into ‘D:/Users/beenfr/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Error: Failed to install 'RforMassSpectrometry' from GitHub:
  Failed to install 'MsExperiment' from GitHub:
  Failed to install 'Spectra' from GitHub:
  (converted from warning) package ‘MsCoreUtils’ is not available (for R version 3.6.1)
In addition: Warning messages:
1: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
2: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
3: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
4: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
5: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
6: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers

BiocManager will only install package dependencies that are available on CRAN or Bioconductor. Other packages that are on github need to be installed explicitly

# depending on the ordering of dependencies the order may need to change
BiocManager::install("rformassspectrometry/MsCoreUtils", "rformassspectrometry/MsExperiment", "RforMassSpectrometry/Spectra", "RforMassSpectrometry/Features")
BiocManager::install("RforMassSpectrometry/RforMassSpectrometry")

The help installation page should be updated for non official CRAN/Bioconductor packages. https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#installation

Thank you for reporting the issue. This should be fixed now (at least, according to local tests using R patched and devel). Could you please try again and confirm. Otherwise, please follow up here or, if possible, on the GitHub issue to reduce noise.