Install Bioconductor in R studio
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@zeinabourhane-22537
Last seen 4.3 years ago

Hello, I am trying to install Bioconductor in R studio to use phyloseq. source("https://bioconductor.org/biocLite.R") biocLite("phyloseq")

I had this notification Erreur : With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install What can i do ?

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Entering edit mode
Kevin Blighe ★ 3.9k
@kevin
Last seen 8 weeks ago
Republic of Ireland

The recommended way to install packages is now via BiocManager. If you run this code, it should install the phyloseq package for you:

install BiocManager if not already installed

if (!requireNamespace('BiocManager', quietly = TRUE))
    install.packages('BiocManager')

You will only have to run this once

install desired package

BiocManager::install('phyloseq')

Merci, Kevin

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