GenomicRanges: Find N nearest/preceding/following ranges
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maltethodberg ▴ 170
@maltethodberg-9690
Last seen 8 days ago
Denmark

The nearest(), precede() and follow() functions find the single nearest/preceding/following range.

Is there a similar implementation and/or easy way to find an arbitrary number of corresponding ranges, e.g. the 5 preceding ranges?

genomicranges • 1.0k views
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@michael-lawrence-3846
Last seen 2.4 years ago
United States

There's the unexported GenomicRanges:::findKNN(). It finds all k nearest neighbors. I think it could be modified to just return the preceding/following ranges. There's already an option to ignore overlaps. If it's useful let me know; maybe we should clean it up and export it.

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Thanks for the tip! I'd say that's a reasonably useful function. Would also be nice if it worked with GPos

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