Suggestion for circlize package in R for plotting the datasets
0
0
Entering edit mode
sinha.puja ▴ 10
@sinhapuja-18708
Last seen 2.8 years ago

Hi All,

I have large data set with methylation values ranging from 0-1. The data contains around 3 million rows of values corresponding to the chromosomal locations. I want to split/sort my data for plot using circos plot. I thought of doing like sorting the value range 0.2-0.4 as hypomethylation category and range 0.7-1.0 as hypermethylation category. However, with this approach the plot again looks cluttered. Another way is that I can split the data into two parts, one part with values lower than median, and another part with values larger than median.

Can anyone suggest me which approach is better or if there are other approaches I can implement in my datasets to make data possible for circos plot using circlize package.

Thanks.

Circlize • 511 views
ADD COMMENT
0
Entering edit mode

Cross-posted on Biostars: https://www.biostars.org/p/422662/

ADD REPLY

Login before adding your answer.

Traffic: 317 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6