www site problem

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Al Ivens ▴ 270

@al-ivens-1646

Last seen 10.2 years ago

Hi, Not sure this is the best place to send this, but the bioconductor www site is not working properly: http://www.bioconductor.org/packages/1.8/Microarray.html then try clicking on any of the packages....they all link to file:///home/biocadmin/PACKAGES/1.8/bioc/html/affycoretools.html or similar. a

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ADD COMMENT • link updated 18.6 years ago by Seth Falcon ★ 7.4k • written 18.6 years ago by Al Ivens ▴ 270

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Seth Falcon ★ 7.4k

@seth-falcon-992

Last seen 10.2 years ago

"Al Ivens" <alicat at="" sanger.ac.uk=""> writes: > Hi, > > Not sure this is the best place to send this, but the bioconductor www > site is not working properly: > > http://www.bioconductor.org/packages/1.8/Microarray.html > > then try clicking on any of the packages....they all link to > file:///home/biocadmin/PACKAGES/1.8/bioc/html/affycoretools.html or > similar. This is a fine place to send such a report. We will have a fix shortly. One of our publishing scripts needs a bit of tweaking I'm agraid. Thanks, + seth

ADD COMMENT • link 18.6 years ago Seth Falcon ★ 7.4k

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Seth Falcon ★ 7.4k

@seth-falcon-992

Last seen 10.2 years ago

Should be fixed now. Sorry for the inconvenience.

ADD COMMENT • link 18.6 years ago Seth Falcon ★ 7.4k

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Seth, not quite....! http://bioconductor.org/packages/1.8/bioc/html/snapCGH.html then try linking to the views.... ;-) a > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of > Seth Falcon > Sent: 08 May 2006 14:48 > To: bioconductor at stat.math.ethz.ch > Subject: Re: [BioC] www site problem > > > Should be fixed now. Sorry for the inconvenience. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/biocondu> ctor > Search the > archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >

ADD REPLY • link 18.6 years ago Al Ivens ▴ 270

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Al Ivens wrote: > Seth, not quite....! > > http://bioconductor.org/packages/1.8/bioc/html/snapCGH.html > > then try linking to the views.... > > Hi Al, I've made another attempt to fix this. Please let me know of any other problem and sorry again for the inconvenience. Best, H. -- ------------------------ Hervé Pagès E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

ADD REPLY • link 18.6 years ago Hervé Pagès 16k

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Thanks Herve, all looks OK now! a > -----Original Message----- > From: Herve Pages [mailto:hpages at fhcrc.org] > Sent: 09 May 2006 06:24 > To: Al Ivens > Cc: 'Seth Falcon'; bioconductor at stat.math.ethz.ch > Subject: Re: [BioC] www site problem > > > Al Ivens wrote: > > Seth, not quite....! > > > > http://bioconductor.org/packages/1.8/bioc/html/snapCGH.html > > > > then try linking to the views.... > > > > > Hi Al, > > I've made another attempt to fix this. > Please let me know of any other problem and sorry again > for the inconvenience. > Best, > > H. > > -- > ------------------------ > Hervé Pagès > E-mail: hpages at fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > ------------------------ > >

ADD REPLY • link 18.6 years ago Al Ivens ▴ 270

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It looks as if some of the RBGL functions ('sp.between' for example) depend upon the old graph class, pre 1.10, in which edge weights were an obligatory attribute. sp.between (g, 'F', 'L') Error in if (any(eWW[eWW < 0])) stop("sp.between requies that all edge weights are nonnegative") : missing value where TRUE/FALSE needed sp.between <- function (g, start, finish) { ... eW = edgeWeights(g) eWW <- unlist(eW) if (any(eWW[eWW < 0])) stop("sp.between requies that all edge weights are nonnegative") Is there any plan to accommodate the new 'weightless' graph class design? Or is there any workaround anybody can suggest? Thanks! - Paul

ADD REPLY • link 18.5 years ago Paul Shannon ▴ 40

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