Question

can not load org.dm.eg.db library

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shefy • 0

@shefy-23153

Last seen 4.2 years ago

hello

I am currently working with R studio (r version 3.6). I have difficulties to install the package: "org.dm.eg.db" i installed BioManager using the folowing:

>  if (!requireNamespace("BiocManager", quietly = TRUE)) + 
      install.packages("BiocManager")

to install the "org.dm.eg.db" package i used:

 > BiocManager::install("org.Dm.eg.db")

and then i get the error messege: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) : installation of package ‘org.Dm.eg.db’ had non-zero exit status

What is that mean and what should I do?

Regards

annotation • 500 views

ADD COMMENT • link updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by shefy • 0

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What is the first ERROR that is reported in the output after you say BiocManager::install("org.Dm.eg.db") ? Also be sure to include the output of the sessionInfo() command. Here's mine:

> sessionInfo()
R version 3.6.3 Patched (2020-02-29 r77906)
Platform: x86_64-apple-darwin17.7.0 (64-bit)
Running under: macOS High Sierra 10.13.6

Matrix products: default
BLAS:   /Users/ma38727/bin/R-3-6-branch/lib/libRblas.dylib
LAPACK: /Users/ma38727/bin/R-3-6-branch/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_3.6.3

ADD REPLY • link 4.2 years ago Martin Morgan 25k