SWATH2stats Package installation error

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jchristie • 0

@jchristie-23291

Last seen 5.6 years ago

I am relatively naive to bioinformatics, during this locked down period I am trying to learn it a bit for proteomics data that I have generated.

I am trying to download a package available here at Bioconductor named SWATH2stats, while installing I got the below-mentioned error.

ERROR: dependencies ‘XML’, ‘httr’, ‘openssl’, ‘BiocFileCache’ are not available for package ‘biomaRt’
* removing ‘/home/joelc/R/x86_64-pc-linux-gnu-library/3.6/biomaRt’
ERROR: dependency ‘biomaRt’ is not available for package ‘SWATH2stats’
* removing ‘/home/joelc/R/x86_64-pc-linux-gnu-library/3.6/SWATH2stats’

Will anyone be able to address this query of mine.

Thanks, Joel

software error • 574 views

ADD COMMENT • link updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by jchristie • 0

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I am able to install, installed all the dependencies - XML, openssl and BiocFileCache.

ADD REPLY • link 5.6 years ago jchristie • 0

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Could you please show all output from BiocManager::install("biomaRt")? And include your sessionInfo()?

ADD REPLY • link 5.6 years ago shepherl 4.2k

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