Slingshot - residual_variance
0
0
Entering edit mode
@adrian-johnson-2728
Last seen 2.8 years ago

Dear Bioconductor, slingshot experts,

While capturing top differential expression genes, I am using the following function. I am using seurat object (seu). I am unable to find where I can find residual_variance. Could someone help. Thanks Adrian

top_hvg <- HVFInfo(seu) %>%
  mutate(., bc = rownames(.)) %>%
  arrange(desc(residual_variance)) %>%
  top_n(300, residual_variance) %>%
  pull(bc)

Error: object 'residual_variance' not found
Slingshot • 368 views
ADD COMMENT
0
Entering edit mode

I'm sorry, I'm not sure I understand how this is related to Slingshot. All the functions used here seem to be from either Seurat or dplyr.

According to the HVFInfo documentation, that function returns a data frame with means, dispersion, and scaled dispersion, but it makes no mention of residual variance.

ADD REPLY
0
Entering edit mode

I'm sorry, I'm not sure I understand how this is related to Slingshot. All the functions used here seem to be from either Seurat or dplyr.

According to the HVFInfo documentation, that function returns a data frame with means, dispersion, and scaled dispersion, but it makes no mention of residual variance.

ADD REPLY

Login before adding your answer.

Traffic: 208 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6