Question

pacbio long reads into DESeq2

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pwnoyce • 0

@pwnoyce-17941

Last seen 4.0 years ago

Using pacbio sequel 2 machine and iso-seq3 analysis I have CCS reads of transcripts. Can I input them into DESeq2 for differential transcript analysis?

deseq2 • 475 views

ADD COMMENT • link updated 4.0 years ago by Michael Love 42k • written 4.0 years ago by pwnoyce • 0

score 0 · Answer 1 · 2020-05-09

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Michael Love 42k

@mikelove

Last seen 13 hours ago

United States

Yes this should be ok. We tested transcript analysis in our 2018 F1000Research paper.

ADD COMMENT • link 4.0 years ago Michael Love 42k