Differential gene expression analysis
1
0
Entering edit mode
@datafanatic-12212
Last seen 22 months ago

I am performing differential gene expression using DESeq2 but will be subsetting transcripts based on a pre-determined criterion. Does this sub-setting violate any assumptions make by the statistical package? In other words, does DESeq2 expect a minimum number of genes? Thanks!

deseq2 • 294 views
ADD COMMENT
1
Entering edit mode
@mikelove
Last seen 5 days ago
United States

This has been asked before on the site but I'm sure it's very difficult to find the answer.

I found it by google with site:support.bioconductor.org deseq2 subset genes

See my answer here:

https://support.bioconductor.org/p/86113/#86396

ADD COMMENT
0
Entering edit mode

Thank you very much!

ADD REPLY
0
Entering edit mode

Thank you very much!

ADD REPLY

Login before adding your answer.

Traffic: 600 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6