GOSemSim: "godata" function can not run using self-made org.db.package.
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Wojeff • 0
@wojeff-14309
Last seen 14 months ago

I make an org.db package example as the instruction from the manual of bioconductor.org/packages/release/bioc/vignettes/AnnotationForge/inst/doc/MakingNewOrganismPackages.html And I want to use goSemsim package to calculate the similarity between GOs or genes. but the "godata" function can not run.

 godata(OrgDb = "org.Tguttata.eg.db",keytype = "GENENAME",ont = "MF")
 preparing gene to GO mapping data...
  Error in FUN(X[[i]], ...) : 
 Two fields in the source DB have the same name.
GOSemSim makeOrgPackage godata • 250 views
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@james-w-macdonald-5106
Last seen 3 hours ago
United States

See here

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