Showing : GOSemSim • reset
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Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
5 weeks ago daccar98 • 0
0
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1
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599
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GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 17 months ago by ▴ 760 • written 17 months ago by • 0
1
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1
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875
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 10
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2
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2.3k
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Can't install GO.db
GOexpress GO.db GOSemSim
2.1 years ago Chruut • 0
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888
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.9 years ago Amandeep • 0
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3
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2.2k
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using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.9 years ago by 52k • written 2.9 years ago by ▴ 90
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1
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1.2k
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is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 4.2 years ago by 6.7k • written 4.2 years ago by • 0
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1.2k
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GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
0
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1
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2.1k
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GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.5 years ago Jenny Drnevich ★ 2.0k
1
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1
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1.8k
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How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
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3
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1.4k
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Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
5.4 years ago helenlong1 • 0
0
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1
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973
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Using GoSemSim with other Ontologies
GOSemSim
updated 5.4 years ago by ▴ 760 • written 5.4 years ago by • 0
3
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12
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3.1k
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Trouble installing GOSemSim
GOSemSim S4Vectors
5.7 years ago sergi.picart ▴ 20
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1
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1.2k
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Gene similarity by GOSemSim
gosemsim mgenesim
6.0 years ago athirak1986 • 0
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0
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1.2k
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GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
6.0 years ago nooshin ▴ 300
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2
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1.4k
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(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 6.0 years ago by ★ 1.2k • written 6.0 years ago by • 0
2
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2
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2.0k
views
Error: could not find function "godata"
gosemsim
6.4 years ago anton.kratz ▴ 60
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1
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1.3k
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GO similarity by GOSemSim
gosemsim similarity
6.5 years ago ahatashkar • 0
8
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5
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2.7k
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Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 60
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1
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1.6k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.7 years ago by ▴ 760 • written 9.2 years ago by ▴ 10
1
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12
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3.8k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by ▴ 10
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5
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1.7k
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Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by ▴ 10
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4
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1.7k
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problem of GOSemSim R package operation geneSim()
gosemsim
8.6 years ago bnembarekmarwa • 0
1
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1
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1.4k
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GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by • 0
0
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9
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3.2k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 9.4 years ago by ▴ 10 • written 9.7 years ago by • 0
0
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4
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2.1k
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GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.6 years ago cpcantalapiedra • 0
1
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2
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2.0k
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GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.8 years ago by ★ 1.2k • written 9.8 years ago by ▴ 10
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0
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1.8k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.1 years ago Guangchuang Yu ★ 1.2k
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1
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1.6k
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GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 11.0 years ago by ★ 1.2k • written 11.0 years ago by ★ 13k
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1.3k
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GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.2 years ago Guangchuang Yu ★ 1.2k
0
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1.0k
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GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.3 years ago Guest User ★ 13k
0
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1
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1.5k
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(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 12.4 years ago by ★ 1.2k • written 12.4 years ago by ★ 13k
0
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1
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1.3k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 10
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1
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1.4k
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 20
34 results • Page 1 of 1
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Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by swbarnes2 ★ 1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output by Aimee • 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package by James W. MacDonald 67k
If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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