I'm trying to compare RNA Seq data from human tumors with mice primary cells. Is it possible to import it directly through tximeta ?
From the following code, I guess that this is because transcript ID are different, which is indeed the case...
se <- tximeta(coldata, type = "kallisto") 1 2 3 4 5 6 7 8 9 10 11 12 13 Error in tximport(files, type = type, txOut = txOut, ...) : all(txId == raw[[txIdCol]]) is not TRUE In addition: Warning message: In txId == raw[[txIdCol]] : longer object length is not a multiple of shorter object length
If tximeta is not able to point to multiple references, is there a proper way to perform this analysis ? The quantification was performed using Kallisto.
Thanks a lot !