I want to create gene set for Saccharomyces cerevisiae using go.gsets function from GAGE package. I don't want to use the ready go.sets.sc in the package as I'd like to have the subs info (BP, MF and CC) all together inside the gene set file; this as was also done by developers for human example. But, I get this error:
> go.sc = go.gsets(species = "yeast") Gene ID type for 'yeast' is: 'ORF' Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000060" not found
Any recommendations for solving this problem?