Showing : gene set • reset
1
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3
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329
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Creating gene set data for yeast
GAGE gene set go.gsets
updated 13 months ago by ★ 1.5k • written 14 months ago by ▴ 10
2
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3
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2.6k
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Making a circos plot to show expression for a gene set rather than whole genome
Gene set gene set analysis omiccircos
updated 4.1 years ago by ▴ 20 • written 6.7 years ago by • 0
0
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0
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514
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User defined gene or metabolite set in globaltest
globaltest gene set
4.8 years ago the_august • 0
2
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2
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681
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Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 5.3 years ago by 58k • written 5.3 years ago by • 0
4 results • Page 1 of 1
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Answer: Microarray - Illumina Metadata by James W. MacDonald 58k
It's not exactly clear to me what you are after, but I'll take a stab at it. First off you probably want to read in using the `GEOquery` pa…
Answer: Can VST be run without runing DESeq or estimateSizeFactors by ATpoint ▴ 850
Just run it, the necessary steps are taken care of internally. You do not have to do anything other than `vst()`.
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
Hi, just in case for future users with a similar problem. The package doesn't seem to work with the resources downloaded from the Annotatio…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
EDIT: Ignore this, re-read the warning message in more detail (belatedly). I am now moving the cache. Thanks for the reply, I have since u…
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Michael Love 34k
See the tidy argument details.
Votes
Answer: DESeq2 fold change filtering
A: Differential expression of RNA-seq data using limma and voom()
A: Differential expression analysis starting from TPM data
Comment: deseq2 machine sizing best practices for very large data set
Comment: Extracting normalized counts in MEDIPS
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Scholar to Robert Castelo ★ 2.7k
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