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@zen-22107
Last seen 4.2 years ago
Hello,
I am using RNA-seq data and SNP data to identify expression QTL. I have generated normalized gene expression data. I want to calculate heritability, cis trans variance and eQTL. I found many posts but could not find how to proceed from the beginning with normalized data for samples. My data have genes in columns and samples in rows and the normalized values for each gene and sample. I will appreciate any help. Thank you!
Are you referring to the
eQTLBioconductor package or just eQTL generally? If you are referring generally, then your question would be better asked on a more general website for bioinformatics, or, if you are referring to any particular program, you could contact the developers. For example, Oliver Stegle developed PEER: https://github.com/PMBio/peer/wikiThank you, I am referring to eQTL generally.