How to get similarity score between two genomes of different species
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drew.neely • 0
@drewneely-24283
Last seen 11 months ago

I have many .fasta files of many different species that I am trying to build a phylogenetic tree from. I do not have labeled genes, just raw DNA sequences. As a starting point, I would like to be able to get a kind of similarity score similar to that which NCBI blast reports. I am new to bioconductor, so any pointers towards libraries, functions, algorithms, or papers I could use would be much appreciated.

fasta multi-species • 179 views
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This question may be more suited to a general bioinformatics forum, like Biostars, unless you are referring to any particular R / Bioconductor package?

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