Entering edit mode
Kimpel, Mark W
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890
@kimpel-mark-w-727
Last seen 10.3 years ago
I have recently migrated to R 2.4.0 and BioC 1.9 I cannot update
packages OCPlus and RSNper from within R or from the web interface.
Below are the errors I get and my sessionInfo()
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
OCplus :
Version 1.7.0 installed in C:/PROGRA~1/R/R-24~1.0/library
Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
Update (y/N/c)? y
RSNPper :
Version 1.6.3 installed in C:/PROGRA~1/R/R-24~1.0/library
Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
Update (y/N/c)? y
trying URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/cont
rib/2.4/OCplus_1.8.0.zip'
Error in download.file(url, destfile, method, mode = "wb") :
cannot open URL 'http://bioconductor.org/packages/1.9/bioc/bin
/windows/contrib/2.4/OCplus_1.8.0.zip'
In addition: Warning messages:
1: Do not know which element of 'lib' to install dependencies into
skipping dependencies in: .install.winbinary(pkgs = pkgs, lib = lib,
contriburl = contriburl,
2: cannot open: HTTP status was '403 Forbidden'
Warning in download.packages(pkgs, destdir = tmpd, available =
available, :
download of package 'OCplus' failed
trying URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/cont
rib/2.4/RSNPper_1.8.0.zip'
Error in download.file(url, destfile, method, mode = "wb") :
cannot open URL 'http://bioconductor.org/packages/1.9/bioc/bin
/windows/contrib/2.4/RSNPper_1.8.0.zip'
In addition: Warning message:
cannot open: HTTP status was '403 Forbidden'
Warning in download.packages(pkgs, destdir = tmpd, available =
available, :
download of package 'RSNPper' failed
Loading required package: affy
Loading required package: affyio
[1] TRUE
Loading required package: limma
[1] TRUE
> sessionInfo()
R version 2.4.0 (2006-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] "stats" "graphics" "grDevices" "datasets" "utils"
"methods" "tools" "base"
other attached packages:
limma affy affyio Biobase
"2.9.1" "1.12.0" "1.2.0" "1.12.0"
>From the web interface (example is RSNper but get same message with
OCPlus):
http://www.bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/
RSNPper_1.8.0.zip
Access forbidden!
You don't have permission to access the requested object. It is either
read-protected or not readable by the server.
If you think this is a server error, please contact the webmaster.
Error 403
www.bioconductor.org
Mon Oct 9 08:46:36 2006
Apache/2.0.49 (Linux/SuSE)
Mark W. Kimpel MD
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Official Business Address:
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Department of Psychiatry
Indiana University School of Medicine
PR M116
Institute of Psychiatric Research
791 Union Drive
Indianapolis, IN 46202
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