Question

Loading affy library

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James W. MacDonald 65k

@james-w-macdonald-5106

Last seen 8 hours ago

United States

Hi all, I am having a problem loading the affy library into R. Here is the message I get: library(affy) Loading required package: Biobase Loading required package: methods Expanding the signature to include omitted arguments in definition: j = "missing" Loading required package: eda Error in setGeneric("length", where = where) : "length" is a primitive function; methods can be defined for some of these but setGeneric must not be called Error in library(affy) : .First.lib failed Any ideas? James W. MacDonald UMCCC Microarray Core Facility 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

Microarray affy Microarray affy • 1.2k views

ADD COMMENT • link updated 21.9 years ago by Anthony Rossini ▴ 530 • written 21.9 years ago by James W. MacDonald 65k

score 0 · Answer 1 · 2002-06-04

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Anthony Rossini ▴ 530

@anthony-rossini-10

Last seen 9.6 years ago

>>>>> "james" == James W Mac Donald <james> writes: james> Hi all, james> I am having a problem loading the affy library into R. Here is the message james> I get: james> library(affy) james> Loading required package: Biobase james> Loading required package: methods james> Expanding the signature to include omitted arguments james> in definition: j = "missing" james> Loading required package: eda james> Error in setGeneric("length", where = where) : james> "length" is a primitive function; methods can be defined for some james> of these but setGeneric must not be called james> Error in library(affy) : .First.lib failed james> Any ideas? You should be using R 1.5; are you? (the "methods" error suggests not?) best, -tony -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini@u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my friday location is usually completely unpredictable.)

ADD COMMENT • link 21.9 years ago Anthony Rossini ▴ 530

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I am using R 1.5, and I updated all of the librarys to make sure it wasn't simply an outdated library. In addition I made sure that I have everything set up so tcltk will load correctly (I assume I need tcltk in order to use tkWidgets). Thanks, Jim James W. MacDonald UMCCC Microarray Core Facility 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 On 4 Jun 2002, A.J. Rossini wrote: > >>>>> "james" == James W Mac Donald <james> writes: > > james> Hi all, > james> I am having a problem loading the affy library into R. Here is the message > james> I get: > > james> library(affy) > james> Loading required package: Biobase > james> Loading required package: methods > james> Expanding the signature to include omitted arguments > james> in definition: j = "missing" > james> Loading required package: eda > james> Error in setGeneric("length", where = where) : > james> "length" is a primitive function; methods can be defined for some > james> of these but setGeneric must not be called > james> Error in library(affy) : .First.lib failed > > james> Any ideas? > > You should be using R 1.5; are you? (the "methods" error suggests not?) > > best, > -tony > > -- > A.J. Rossini Rsrch. Asst. Prof. of Biostatistics > U. of Washington Biostatistics rossini@u.washington.edu > FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org > -------------- http://software.biostat.washington.edu/ ---------------- > FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email > UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX > (my friday location is usually completely unpredictable.) > >

ADD REPLY • link 21.9 years ago James W. MacDonald 65k

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>>>>> "james" == James W Mac Donald <james> writes: james> I am using R 1.5, and I updated all of the librarys to make sure it wasn't james> simply an outdated library. In addition I made sure that I have everything james> set up so tcltk will load correctly (I assume I need tcltk in order to use james> tkWidgets). That is correct. Are you using Microsoft or a Unix-like OS? best, -tony -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini@u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my friday location is usually completely unpredictable.)

ADD REPLY • link 21.9 years ago Anthony Rossini ▴ 530

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Yeah I suppose that might help. My OS is Windows XP Pro. Jim James W. MacDonald UMCCC Microarray Core Facility 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 On 4 Jun 2002, A.J. Rossini wrote: > >>>>> "james" == James W Mac Donald <james> writes: > > james> I am using R 1.5, and I updated all of the librarys to make sure it wasn't > james> simply an outdated library. In addition I made sure that I have everything > james> set up so tcltk will load correctly (I assume I need tcltk in order to use > james> tkWidgets). > > That is correct. Are you using Microsoft or a Unix-like OS? > > best, > -tony > > -- > A.J. Rossini Rsrch. Asst. Prof. of Biostatistics > U. of Washington Biostatistics rossini@u.washington.edu > FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org > -------------- http://software.biostat.washington.edu/ ---------------- > FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email > UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX > (my friday location is usually completely unpredictable.) > >

ADD REPLY • link 21.9 years ago James W. MacDonald 65k