Hi Group, Is there a package for querying InterPro database for protein domains? Thanks, Anguraj

Anguraj Sadanandam scripsit 16/03/2008 23:09: > Hi Group, > > Is there a package for querying InterPro database for protein domains? > > Thanks, > > Anguraj Hi Anguraj the biomaRt package allows you to query, for example, the Ensembl biomart interface, via which you can get, among many other things, Interpro Short Description, Interpro Description and Interpro ID for proteins, when you supply it with a list of gene, transcript or protein identifiers. Best wishes Wolfgang PS Asking more precise questions might give you more and better answers. ------------------------------------------------------------------ Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber

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