ENSG00000007968 broken
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Amanda Miotto ▴ 120
@amanda-miotto-2933
Last seen 9.7 years ago
When using ENSG00000007968 GenomeGraphs breaks, giving the following. Works fine for everything else > gene = new("Gene", id = "ENSG00000007968",type = "ensembl_gene_id", biomart = mart) V1 1 <head> 2 <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"/> 3 <meta name="description" content="The European Bioinformatics Institute"/> 4 <meta name="author" content="EBI Web Team"/> 5 <meta http-equiv="Content-Language" content="en-GB"/> 6 <meta http-equiv="Window-target" content="_top"/> 7 <meta name="no-email-collection" content="http://www.unspam.com/noemailcollection/"/> 8 <title>EBI Web Application Failure messagee</title> 9 <link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/contents.css" type="text/css"/> 10 <link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/userstyles.css" type="text/css"/> 11 <script src="http://www.ebi.ac.uk/inc/js/contents.js" type="text/javascript"></script> 12 <link rel="SHORTCUT ICON" href="http://www.ebi.ac.uk/bookmark.ico"/> 13 </head> 14 <body onload="if(navigator.userAgent.indexOf('MSIE') != -1) document.getElementById('head').allowTransparency = true;"> 15
16 <iframe src="http://www.ebi.ac.uk/inc/head.html" name="head" id="head" frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no" width="100%" style="position:absolute; z-index: 1; height: 57px;"></iframe> 17
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22 <iframe src="http://www.ebi.ac.uk/errors/failure.html" name="downtime" frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no" width="100%" height="320px"></iframe> 23
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35 <script src="http://www.ebi.ac.uk/inc/js/footer.js" type="text/javascript"></script> 36
37 </body> 38 </html> Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", : Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report. Amanda Miotto a.miotto at griffith.edu.au Software Engineer. Research Computing Services INFORMATION SERVICES Griffith University, NATHAN 4111, AUSTRALIA Phone: +61 7 37354419 Fax: +61 7 37356650 Web: http://eResearch.griffith.edu.au/ PRIVILEGED - PRIVATE AND CONFIDENTIAL: This email and any files transmitted with it are intended solely for the use of the addressee(s) and may contain information which is confidential or privileged. If you receive this email and you are not the addressee(s) [or responsible for delivery of the email to the addressee(s)], please disregard the contents of the email, delete the email and notify the author immediately.
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@wolfgang-huber-3550
Last seen 6 weeks ago
EMBL European Molecular Biology Laborat…
Dear Amanda sessionInfo() ? Also, please give a reproducible example (e.g. how did you construct the object "mart"?) Bw Wolfgang 29/08/2008 02:42 Amanda Miotto scripsit > When using > ENSG00000007968 > GenomeGraphs breaks, giving the following. Works fine for everything else > >> gene = new("Gene", id = "ENSG00000007968",type = "ensembl_gene_id", > biomart = mart) > V1 > 1 > <head> > 2 > <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"/> > 3 > <meta name="description" content="The European Bioinformatics Institute"/> > 4 > <meta name="author" content="EBI Web Team"/> > 5 > <meta http-equiv="Content-Language" content="en-GB"/> > 6 > <meta http-equiv="Window-target" content="_top"/> > 7 > <meta name="no-email-collection"> content="http://www.unspam.com/noemailcollection/" /> > 8 > <title>EBI Web Application Failure messagee</title> > 9 > <link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/contents.css"> type="text/css" /> > 10 > <link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/userstyles.css"> type="text/css" /> > 11 > <script src="http://www.ebi.ac.uk/inc/js/contents.js"> type="text/javascript"></script> > 12 > <link rel="SHORTCUT ICON" href="http://www.ebi.ac.uk/bookmark.ico"/> > 13 > </head> > 14 > <body onload="if(navigator.userAgent.indexOf('MSIE') != -1) &gt; document.getElementById('head').allowTransparency = true;"> > 15 >
> 16 <iframe src="http://www.ebi.ac.uk/inc/head.html" name="head"> id="head" frameborder="0" marginwidth="0px" marginheight="0px" > scrolling="no" width="100%" style="position:absolute; z-index: 1; height: > 57px;"></iframe> > 17 >
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> 19 > > 20 > > 21 > > 24 > > 25 >
> 22 <iframe> src="http://www.ebi.ac.uk/errors/failure.html" name="downtime" > frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no" > width="100%" height="320px"></iframe> > 23 >
> 26 > > 27 > > 28 > > 33 > > 34 >
> 29 >
> 30 <iframe> src="http://www.ebi.ac.uk/inc/foot.html" name="foot" frameborder="0" > marginwidth="0px" marginheight="0px" scrolling="no" height="22px" > width="100%" style="z-index:2;"/> > 31 >
> 32 >
> 35 > <script src="http://www.ebi.ac.uk/inc/js/footer.js"> type="text/javascript"></script> > 36 >
> 37 > </body> > 38 > </html> > Error in getBM(c("structure_gene_stable_id", > "structure_transcript_stable_id", : > Number of columns in the query result doesn't equal number of attributes > in query. This is probably an internal error, please report. > > > > > > Amanda Miotto > a.miotto at griffith.edu.au > > Software Engineer. > Research Computing Services > INFORMATION SERVICES > Griffith University, NATHAN 4111, AUSTRALIA > Phone: +61 7 37354419 Fax: +61 7 37356650 > Web: http://eResearch.griffith.edu.au/ > > PRIVILEGED - PRIVATE AND CONFIDENTIAL: > This email and any files transmitted with it are intended solely for > the use of the addressee(s) and may contain information which is > confidential or privileged. If you receive this email and you are > not the addressee(s) [or responsible for delivery of the email to the > addressee(s)], please disregard the contents of the email, delete the > email and notify the author immediately. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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