Thanks a lot! Just don't forget the final "/" in the host name ;) > listMarts(host="may2009.archive.ensembl.org/biomart/martservice/") Regards Julien Rhoda Kinsella a ?crit : > Hi Julien, > You can connect to the ensembl.org archive marts by specifying the URL > of the archive version you would like to use: > > > listMarts(host="may2009.archive.ensembl.org/biomart/martservice") > biomart version > 1 ENSEMBL_MART_ENSEMBL Ensembl 54 > 2 ENSEMBL_MART_SNP Ensembl Variation 54 > 3 ENSEMBL_MART_VEGA Vega 35 > 4 REACTOME Reactome(CSHL US) > 5 wormbase_current WormBase (CSHL US) > 6 pride PRIDE (EBI UK) > > > To find the correct URL to use, click on the biomart link in the > archive version of Ensembl that you are interested in. > The list of archive versions can be found here: > > http://www.ensembl.org/info/website/archives/index.html > > I hope that helps, > Regards, > Rhoda > > > > On 16 Jul 2009, at 11:25, Julien Roux wrote: > >> Dear mailing list, >> >> I am willing to use the biomart archives for ensembl 53, but when >> using the command: >> > listMarts(archive = TRUE) >> ... the most recent ensembl release in 51 >> Is there a reason for that? >> >> Thanks for your help >> Julien >> >> PS: I am using R 2.9.1 with bioconductor 2.4 and biomaRt 2.0.0 >> >> -- >> Julien Roux, PhD student >> http://bioinfo.unil.ch/ >> Department of Ecology and Evolution >> Biophore, University of Lausanne, 1015 Lausanne, Switzerland >> tel: +41 21 692 4221 fax: +41 21 692 4165 >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > Rhoda Kinsella Ph.D. > Ensembl Bioinformatician, > European Bioinformatics Institute (EMBL-EBI), > Wellcome Trust Genome Campus, > Hinxton > Cambridge CB10 1SD, > UK. > -- Julien Roux, PhD student http://bioinfo.unil.ch/ Department of Ecology and Evolution Biophore, University of Lausanne, 1015 Lausanne, Switzerland tel: +41 21 692 4221 fax: +41 21 692 4165