Hi Gemma, [cc'ing the BioC mailing list] Gemma Danks wrote: > Dear Herve, > > I am trying to forge a BSgenome data package. I was wondering if there > is a limit to the number of sequence files that can be used in > BSgenomeForge? I am having problems using more than 1200 sequence files. In theory there is no limit to the number of sequence files. Can you provide more details about the problems you are having? (Any error message you get, the content of your seed file, your sessionInfo(), etc... anything that could help us diagnose the problem). Also have you tried to forge a small BSgenome data package with only a couple of sequence files, just to make sure that you got things right and that your problems are really due to the big number of sequence files? Cheers, H. > > Best wishes, > > Gemma Danks -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319