Question: Analysing Agilent single color array
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gravatar for carissimo@tigem.it
10.2 years ago by
carissimo@tigem.it30 wrote:
Hi, I'm analysing Agilent single color array, what package can I use for reading and normalizing this type of data? Thank you in advance. Annamaria -- Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon Remember that it is always possible to send your donation Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx
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ADD COMMENTlink modified 10.2 years ago by Yong Li190 • written 10.2 years ago by carissimo@tigem.it30
Answer: Analysing Agilent single color array
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gravatar for Yong Li
10.2 years ago by
Yong Li190
Yong Li190 wrote:
Hi Annamaria, I used the package Agi4x44PreProcess for Agilent one color data and it works fine. However, there is question about a function of it remain unanswered. https://stat.ethz.ch/pipermail/bioconductor/2009-June/028316.html Hope this helps. Yong carissimo at tigem.it wrote: > Hi, > > I'm analysing Agilent single color array, what package can I use for > reading and normalizing this type of data? > > Thank you in advance. > > Annamaria > > > -- > Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon > Remember that it is always possible to send your donation > > Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Dr. Yong Li University of Freiburg ZBSA, FRISYS Core Facility Data Management Habsburgerstrasse 49 D-79104 Freiburg Tel.: +49 761 203-97151 Fax: +49 761 203-97172 E-mail: yong.li at zbsa.uni-freiburg.de
ADD COMMENTlink written 10.2 years ago by Yong Li190
The read.maimages() function in limma can also read in Agilent one- color data. Wei Yong Li wrote: > Hi Annamaria, > > I used the package Agi4x44PreProcess for Agilent one color data and it > works fine. However, there is question about a function of it remain > unanswered. > > https://stat.ethz.ch/pipermail/bioconductor/2009-June/028316.html > > Hope this helps. > > Yong > > carissimo at tigem.it wrote: >> Hi, >> >> I'm analysing Agilent single color array, what package can I use for >> reading and normalizing this type of data? >> >> Thank you in advance. >> >> Annamaria >> >> >> -- >> Ricordate che e' sempre possibile contribuire alla raccolta fondi di >> Telethon >> Remember that it is always possible to send your donation >> >> Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >
ADD REPLYlink written 10.2 years ago by Wei Shi3.2k

Hi,Li,

I'm trying to analysis Agilent single channel microarray with Agi4x44PreProcess, but it always informs me that it can only work for RGList, not EList. Anything I missed? Look forward to your reply.

Thanks!

ADD REPLYlink written 13 months ago by Biomed0
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