GCRMA error

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Stuart M. Chambers ▴ 10

@stuart-m-chambers-516

Last seen 9.7 years ago

I am using Raqua and BioC 1.3 and I have gotten an error while trying to perform GCRMA on several MOE430A chips: Error in getGroupInfo(object) : couldn't find function "complementSeq" I gathered that it's an internal function for bg.adjust.gcrma. Ideas? -Stuart-

moe430a moe430a • 715 views

ADD COMMENT • link updated 20.5 years ago by Zhijin Wu ▴ 410 • written 20.5 years ago by Stuart M. Chambers ▴ 10

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Zhijin Wu ▴ 410

@zhijin-wu-438

Last seen 9.7 years ago

complementSeq is an internal function of the package "matchprobes" and it is in any probepackage. When you call gcrma it should check if you have the appropriate probe package loaded, in your case it should give an error msg indicating "moe403aprobe" is not loaded (if yes the complementSeq function would be available). But if you call bg.adjust.gcrma directly it doesn't check for that. On Tue, 4 Nov 2003, Stuart M. Chambers wrote: > I am using Raqua and BioC 1.3 and I have gotten an error while trying to > perform > GCRMA on several MOE430A chips: > > Error in getGroupInfo(object) : couldn't find function "complementSeq" > > I gathered that it's an internal function for bg.adjust.gcrma. > > > Ideas? > > > -Stuart- > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >

ADD COMMENT • link 20.5 years ago Zhijin Wu ▴ 410

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Hi Zhijin, Stuart, > complementSeq is an internal function of the package "matchprobes" and it > is in any probepackage. ... to be more exact: complementSeq is a function in the package "matchprobes", which is required (i.e. automatically loaded) if you load a probe package, e.g. "hgu95av2probe". Best wishes Wolfgang ------------------------------------- Wolfgang Huber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany Phone: +49 6221 424709 Fax: +49 6221 42524709 Http: www.dkfz.de/abt0840/whuber

ADD REPLY • link 20.5 years ago Wolfgang Huber ★ 13k

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