God morning, I´m using limmaGUI to analyse microarray data extracted as quantarray files. My problem is, that during the analysis I have note that the flagged spots are not being eliminated despite I have selected the function “Spot Quality Weighting” as “wtIgnore.Filter”. I will be waiting for some help (make note that I do not know anything about programming language :-)) Thanks for the attention Susana [[alternative HTML version deleted]]

Hi Susana, I would suggest that you start by rereading the bioc mailing list posting guide and providing substantially more information. http://bioconductor.org/docs/postingGuide.html + seth On 12/8/09 5:43 AM, Susana Gomes wrote: > God morning, > > > > I?m using limmaGUI to analyse microarray data extracted as quantarray files. > > My problem is, that during the analysis I have note that the flagged spots > are not being eliminated despite I have selected the function ?Spot Quality > Weighting? as ?wtIgnore.Filter?. > > > > I will be waiting for some help (make note that I do not know anything about > programming language :-)) > > > > Thanks for the attention > > Susana > > > [[alternative HTML version deleted]] > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Seth Falcon Program in Computational Biology | Fred Hutchinson Cancer Research Center

Dear Susanna, I don't know how you conclude that flagged spots are not being eliminated. Exactly what have you seen that leads you to this conclusion. What do you expect to see? cheers, Keith ======================== Keith Satterley Bioinformatics Division The Walter and Eliza Hall Institute of Medical Research Parkville, Melbourne, Victoria, Australia email:keith at wehi.edu.au ======================= Susana Gomes wrote: > God morning, > > > > I?m using limmaGUI to analyse microarray data extracted as quantarray files. > > My problem is, that during the analysis I have note that the flagged spots > are not being eliminated despite I have selected the function ?Spot Quality > Weighting? as ?wtIgnore.Filter?. > > > > I will be waiting for some help (make note that I do not know anything about > programming language :-)) > > > > Thanks for the attention > > Susana > > > [[alternative HTML version deleted]] > > > -------------------------------------------------------------------- ---- > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:6}}