Question: BioC GUI development
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gravatar for James Wettenhall
16.0 years ago by
James Wettenhall1000 wrote:
Hi, I notice that GUI development is on the agenda for the BioC Users Group meeting. So I thought I'd give an update on what I'm working on. Some of you know, I have an R/TclTk GUI for the limma package called limmaGUI, which is only for cDNA microarray data. (Slightly out-of-date) screenshots of worked examples are available at : http://bioinf.wehi.edu.au/limmaGUI/Doc/ More recently, I've been working on an affy version of the GUI called affylmGUI. Screenshots are available at: http://bioinf.wehi.edu.au/affylmGUI/Doc/Estrogen/ The discussion at BioCBUG may focus more on web-based GUIs which is fine. But Tcl/Tk may be of interest to some people. If anyone wants to install limmaGUI or affylmGUI, they require the Tcl/Tk extensions Tktable and BWidget (available in the ActiveTcl distribution) or from sourceforge. tkrplot from CRAN is required for plotting and some other R packages are recommended (see the DESCRIPTION files). install.packages("limmaGUI",contriburl="http://bioinf.wehi.edu.au/limm aGUI") install.packages("affylmGUI",contriburl="http://bioinf.wehi.edu.au/aff ylmGUI") Don't try to run them both simultaneously in the same R session - not possible yet. Regards, James ---------------------------------------------------------------------- ---- James Wettenhall Tel: (+61 3) 9345 2629 Division of Genetics and Bioinformatics Fax: (+61 3) 9347 0852 The Walter & Eliza Hall Institute E-mail: wettenhall@wehi.edu.au of Medical Research, Mobile: (+61 / 0 ) 438 527 921 1G Royal Parade, Parkville, Vic 3050, Australia http://www.wehi.edu.au
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