Question: Import files from Applied Biosystems 7900HT?
9.5 years ago by
Brian Diggs • 30
Brian Diggs • 30 wrote:
Though I have used R for a few years, I am starting a project where this is my first real use of Bioconductor and I am having a problem reading expression data from files. The files are created by an Applied Biosystems 7900HT machine. I found the ABarray package, but that only claims to work with AB1700 data. On a lark, I tried to use it for my data, but got an error Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 2 did not have 3 elements which seems consistent with a file not being in the right format. Can anyone tell me if there exists a package that can read this data into an ExpressionSet? Or has anyone even used Bioconductor with data from this, and, if so, what needs to be done to import the data? -- Brian Diggs Senior Research Associate, Department of Surgery, Oregon Health & Science University
ADD COMMENT • link •