Dear all, I am happy to report that the issue with arrayQualityMetrics is fixed with today's R-devel. Best wishes, Laurent > sessionInfo() R version 2.13.0 Under development (unstable) (2010-10-09 r53266) Platform: x86_64-unknown-linux-gnu (64-bit) locale: ?[1] LC_CTYPE=en_GB.utf8 ? ? ? LC_NUMERIC=C ?[3] LC_TIME=en_GB.utf8 ? ? ? ?LC_COLLATE=en_GB.utf8 ?[5] LC_MONETARY=C ? ? ? ? ? ? LC_MESSAGES=en_GB.utf8 ?[7] LC_PAPER=en_GB.utf8 ? ? ? LC_NAME=C ?[9] LC_ADDRESS=C ? ? ? ? ? ? ?LC_TELEPHONE=C [11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C attached base packages: [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base other attached packages: [1] arrayQualityMetrics_3.0.15 vsn_3.17.2 [3] affyPLM_1.25.1 ? ? ? ? ? ? preprocessCore_1.11.0 [5] gcrma_2.21.1 ? ? ? ? ? ? ? affy_1.27.3 [7] Biobase_2.9.2 loaded via a namespace (and not attached): ?[1] affyio_1.17.4 ? ? ? ?annotate_1.27.2 ? ? ?AnnotationDbi_1.11.9 ?[4] beadarray_1.99.2 ? ? Biostrings_2.17.48 ? DBI_0.2-5 ?[7] genefilter_1.31.2 ? ?grid_2.13.0 ? ? ? ? ?hwriter_1.2 [10] IRanges_1.7.39 ? ? ? lattice_0.19-13 ? ? ?latticeExtra_0.6-15 [13] limma_3.5.21 ? ? ? ? marray_1.27.0 ? ? ? ?RColorBrewer_1.0-2 [16] RSQLite_0.9-2 ? ? ? ?simpleaffy_2.25.0 ? ?splines_2.13.0 [19] stats4_2.13.0 ? ? ? ?survival_2.36-1 ? ? ?SVGAnnotation_0.6-0 [22] XML_3.2-0 ? ? ? ? ? ?xtable_1.5-6 On 10 October 2010 02:16, Martin Morgan <mtmorgan at="" fhcrc.org=""> wrote: > Hi Laurent, Wolfgang -- > > I communicated with Paul about this and he introduced a fix at r53184; I > thought it didn't address the issue but in the end it seems to have for > me (my 'reproducible example' was from ?rasterImage, as > > x11(type="Xlib") > plot(c(100, 250), c(300, 450), type = "n", xlab="", ylab="") > image <- as.raster(matrix(0:1, ncol=5, nrow=4)) > rasterImage(image, 100, 300, 150, 350, interpolate=FALSE) > > > Does the arrayQualityMetrics example work for you? > > Martin >