aroma.affymetrix package installation problem
1
0
Entering edit mode
Yan Jiao ▴ 140
@yan-jiao-4354
Last seen 10.1 years ago
Hi bioconductor guru, I was trying to use aroma.affymetrix package on my windows machine, I'm using R 2.11.0, and I typed: source("http://aroma-project.org/hbLite.R") I got: Error in file(file, "r", encoding = encoding) : cannot open the connection In addition: Warning message: In file(file, "r", encoding = encoding) : cannot open: HTTP status was '404 Not Found' many thanks Yan ********************************************************************** This email and any files transmitted with it are confide...{{dropped:10}}
• 1.3k views
ADD COMMENT
0
Entering edit mode
René Dreos ▴ 80
@rene-dreos-3880
Last seen 10.1 years ago
Hi Yan, It seems to me that R is not able to open a connection. You should try setting the variable: Sys.putenv("http_proxy" = "http://127.0.0.1:8228") the "http://127.0.0.1:8228" is the configuration for my mac, you should check your system for the right proxy and port. best r On 15 November 2010 12:19, Yan Jiao <y.jiao@ucl.ac.uk> wrote: > Hi bioconductor guru, > > > > > I was trying to use aroma.affymetrix package on my windows machine, I'm > using R 2.11.0, and I typed: > > > source("http://aroma-project.org/hbLite.R") > > > > I got: > > Error in file(file, "r", encoding = encoding) : > > cannot open the connection > > In addition: Warning message: > > In file(file, "r", encoding = encoding) : > > cannot open: HTTP status was '404 Not Found' > > > > many thanks > > > > Yan > > > ********************************************************************** > This email and any files transmitted with it are confide...{{dropped:10}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
On Mon, Nov 15, 2010 at 8:28 AM, René Dreos <talponer@gmail.com> wrote: > Hi Yan, > > It seems to me that R is not able to open a connection. You should try > setting the variable: > > Sys.putenv("http_proxy" = "http://127.0.0.1:8228") > > the "http://127.0.0.1:8228" is the configuration for my mac, you should > check your system for the right proxy and port. > > Actually, the error is because the file does not exist on the server, at least for me, and may not be because of a proxy issue. The aroma-project.org maintainer may need to fix the issue on the server side. Sean > best > r > > On 15 November 2010 12:19, Yan Jiao <y.jiao@ucl.ac.uk> wrote: > > > Hi bioconductor guru, > > > > > > > > > > I was trying to use aroma.affymetrix package on my windows machine, I'm > > using R 2.11.0, and I typed: > > > > > > source("http://aroma-project.org/hbLite.R") > > > > > > > > I got: > > > > Error in file(file, "r", encoding = encoding) : > > > > cannot open the connection > > > > In addition: Warning message: > > > > In file(file, "r", encoding = encoding) : > > > > cannot open: HTTP status was '404 Not Found' > > > > > > > > many thanks > > > > > > > > Yan > > > > > > ********************************************************************** > > This email and any files transmitted with it are confide...{{dropped:10}} > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD REPLY
0
Entering edit mode
Thank you for the report and the troubleshooting. http://aroma-project.org/hbLite.R should now be there again (the poor file got forgotten about when the web server was updated yesterday). /Henrik aroma-project.org) On Mon, Nov 15, 2010 at 5:32 AM, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > > > On Mon, Nov 15, 2010 at 8:28 AM, Ren? Dreos <talponer at="" gmail.com=""> wrote: >> >> Hi Yan, >> >> It seems to me that R is not able to open a connection. You should try >> setting the variable: >> >> Sys.putenv("http_proxy" = "http://127.0.0.1:8228") >> >> the "http://127.0.0.1:8228" is the configuration for my mac, you should >> check your system for the right proxy and port. >> > > Actually, the error is because the file does not exist on the server, at > least for me, and may not be because of a proxy issue. ?The > aroma-project.org maintainer may need to fix the issue on the server side. > Sean > >> >> best >> r >> >> On 15 November 2010 12:19, Yan Jiao <y.jiao at="" ucl.ac.uk=""> wrote: >> >> > Hi bioconductor guru, >> > >> > >> > >> > >> > I was trying to use aroma.affymetrix package on my windows machine, I'm >> > using R 2.11.0, and I typed: >> > >> > >> > source("http://aroma-project.org/hbLite.R") >> > >> > >> > >> > I got: >> > >> > Error in file(file, "r", encoding = encoding) : >> > >> > ?cannot open the connection >> > >> > In addition: Warning message: >> > >> > In file(file, "r", encoding = encoding) : >> > >> > ?cannot open: HTTP status was '404 Not Found' >> > >> > >> > >> > many thanks >> > >> > >> > >> > Yan >> > >> > >> > ********************************************************************** >> > This email and any files transmitted with it are >> > confide...{{dropped:10}} >> > >> > _______________________________________________ >> > Bioconductor mailing list >> > Bioconductor at stat.math.ethz.ch >> > https://stat.ethz.ch/mailman/listinfo/bioconductor >> > Search the archives: >> > http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >
ADD REPLY

Login before adding your answer.

Traffic: 813 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6