aroma.affymetrix package installation problem
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Yan Jiao ▴ 140
@yan-jiao-4354
Last seen 8.1 years ago
Hi bioconductor guru, I was trying to use aroma.affymetrix package on my windows machine, I'm using R 2.11.0, and I typed: source("http://aroma-project.org/hbLite.R") I got: Error in file(file, "r", encoding = encoding) : cannot open the connection In addition: Warning message: In file(file, "r", encoding = encoding) : cannot open: HTTP status was '404 Not Found' many thanks Yan ********************************************************************** This email and any files transmitted with it are confide...{{dropped:10}}
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René Dreos ▴ 80
@rene-dreos-3880
Last seen 8.1 years ago
Hi Yan, It seems to me that R is not able to open a connection. You should try setting the variable: Sys.putenv("http_proxy" = "http://127.0.0.1:8228") the "http://127.0.0.1:8228" is the configuration for my mac, you should check your system for the right proxy and port. best r On 15 November 2010 12:19, Yan Jiao <y.jiao@ucl.ac.uk> wrote: > Hi bioconductor guru, > > > > > I was trying to use aroma.affymetrix package on my windows machine, I'm > using R 2.11.0, and I typed: > > > source("http://aroma-project.org/hbLite.R") > > > > I got: > > Error in file(file, "r", encoding = encoding) : > > cannot open the connection > > In addition: Warning message: > > In file(file, "r", encoding = encoding) : > > cannot open: HTTP status was '404 Not Found' > > > > many thanks > > > > Yan > > > ********************************************************************** > This email and any files transmitted with it are confide...{{dropped:10}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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On Mon, Nov 15, 2010 at 8:28 AM, René Dreos <talponer@gmail.com> wrote: > Hi Yan, > > It seems to me that R is not able to open a connection. You should try > setting the variable: > > Sys.putenv("http_proxy" = "http://127.0.0.1:8228") > > the "http://127.0.0.1:8228" is the configuration for my mac, you should > check your system for the right proxy and port. > > Actually, the error is because the file does not exist on the server, at least for me, and may not be because of a proxy issue. The aroma-project.org maintainer may need to fix the issue on the server side. Sean > best > r > > On 15 November 2010 12:19, Yan Jiao <y.jiao@ucl.ac.uk> wrote: > > > Hi bioconductor guru, > > > > > > > > > > I was trying to use aroma.affymetrix package on my windows machine, I'm > > using R 2.11.0, and I typed: > > > > > > source("http://aroma-project.org/hbLite.R") > > > > > > > > I got: > > > > Error in file(file, "r", encoding = encoding) : > > > > cannot open the connection > > > > In addition: Warning message: > > > > In file(file, "r", encoding = encoding) : > > > > cannot open: HTTP status was '404 Not Found' > > > > > > > > many thanks > > > > > > > > Yan > > > > > > ********************************************************************** > > This email and any files transmitted with it are confide...{{dropped:10}} > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Thank you for the report and the troubleshooting. http://aroma-project.org/hbLite.R should now be there again (the poor file got forgotten about when the web server was updated yesterday). /Henrik aroma-project.org) On Mon, Nov 15, 2010 at 5:32 AM, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > > > On Mon, Nov 15, 2010 at 8:28 AM, Ren? Dreos <talponer at="" gmail.com=""> wrote: >> >> Hi Yan, >> >> It seems to me that R is not able to open a connection. You should try >> setting the variable: >> >> Sys.putenv("http_proxy" = "http://127.0.0.1:8228") >> >> the "http://127.0.0.1:8228" is the configuration for my mac, you should >> check your system for the right proxy and port. >> > > Actually, the error is because the file does not exist on the server, at > least for me, and may not be because of a proxy issue. ?The > aroma-project.org maintainer may need to fix the issue on the server side. > Sean > >> >> best >> r >> >> On 15 November 2010 12:19, Yan Jiao <y.jiao at="" ucl.ac.uk=""> wrote: >> >> > Hi bioconductor guru, >> > >> > >> > >> > >> > I was trying to use aroma.affymetrix package on my windows machine, I'm >> > using R 2.11.0, and I typed: >> > >> > >> > source("http://aroma-project.org/hbLite.R") >> > >> > >> > >> > I got: >> > >> > Error in file(file, "r", encoding = encoding) : >> > >> > ?cannot open the connection >> > >> > In addition: Warning message: >> > >> > In file(file, "r", encoding = encoding) : >> > >> > ?cannot open: HTTP status was '404 Not Found' >> > >> > >> > >> > many thanks >> > >> > >> > >> > Yan >> > >> > >> > ********************************************************************** >> > This email and any files transmitted with it are >> > confide...{{dropped:10}} >> > >> > _______________________________________________ >> > Bioconductor mailing list >> > Bioconductor at stat.math.ethz.ch >> > https://stat.ethz.ch/mailman/listinfo/bioconductor >> > Search the archives: >> > http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >> >> ? ? ? ?[[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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