Hi, Could you tell me if your Short Read Bioconductor can format results in BAM format? Thank you, Jelena Jelena Brezo, PhD Associate Director, CMDL City of Hope 1500 E. Duarte Rd., NW, Rm. 2238 Duarte, CA 91010 (626) 256-4673 ext. 64128 jbrezo@coh.org<mailto:cfong@coh.org> --------------------------------------------------------------------- SECURITY/CONFIDENTIALITY WARNING: \ This message an...{{dropped:24}}

On 05/19/2011 04:33 PM, Brezo, Jelena wrote: > Hi, > > Could you tell me if your Short Read Bioconductor can format results in BAM format? Hi Jelena -- ShortRead does not output BAM; BAM are created when reads are aligned, and ShortRead does not do alignments. Rsamtools can filter one BAM file to another, ?filterBam. Best, Martin > > Thank you, > > Jelena > > Jelena Brezo, PhD > Associate Director, CMDL > City of Hope > 1500 E. Duarte Rd., NW, Rm. 2238 > Duarte, CA 91010 > (626) 256-4673 ext. 64128 > jbrezo at coh.org<mailto:cfong at="" coh.org=""> > > > > --------------------------------------------------------------------- > SECURITY/CONFIDENTIALITY WARNING: \ This message an...{{dropped:24}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793