Hi Robin, I am glad to hear that! We are definitely interested in getting reactome better exposure through Bioconductor. We may contact you to help facilitate this in the near future. Marc On 08/15/2011 02:37 PM, Robin Haw wrote: > Dear Martin and Jose, > > We, at Reactome, would be encouraged by the development of Gostats to use > our pathway data. If you would like to discuss this further, please let me > know. > > Likewise, if there are any other BioConductor developers interested in > using Reactome as a source of pathway data, drop me an email. In the > meantime, we do provide a "Reactome Pathway Gene Set" and other annotation > data at http://www.reactome.org/download/. > > Regards, > Robin > > Robin Haw, PhD > Scientific Associate and Outreach Coordinator (Reactome) > > Ontario Institute for Cancer Research > MaRS Centre, South Tower > 101 College Street, Suite 800 > Toronto, Ontario, Canada M5G 0A3 > > Tel: 647-260-7985 > Toll-free: 1-866-678-6427 > http://www.oicr.on.ca > http://www.reactome.org > > This message and any attachments may contain confidential and/or > privileged information for the sole use of the intended recipient. Any > review or distribution by anyone other than the person for whom it was > originally intended is strictly prohibited. If you have received this > message in error, please contact the sender and delete all copies. > Opinions, conclusions or other information contained in this message may > not be that of the organization. > > > > > On 11-08-15 1:21 PM, "J.delasHeras at ed.ac.uk"<j.delasheras at="" ed.ac.uk=""> wrote: > >> Quoting Martin Morgan<mtmorgan at="" fhcrc.org=""> on Mon, 15 Aug 2011 10:11:50 >> -0700: >> >>> On 08/15/2011 05:48 AM, J.delasHeras at ed.ac.uk wrote: >>>> Dear all, >>>> >>>> with the demise of KEGG (well, at least without subscription), I was >>>> wondering whether there are any plans to get GOstats working with the >>>> Reactome database, or whether there is an "easy" way to persuade >>>> GOstats >>>> to work with it. >>> Hi Jose -- >>> >>> Yes, we intend to revise the GOstats, GSEABase, and perhaps other >>> packages to work more flexibly with Reactome& other data base >>> packages. Whether this will be accomplished this release is not clear. >>> >>> Martin >>> >>>> Any ideas? >>>> >>>> Jose >> >> Hi Martin, >> >> that's great news. I have become a bit of a fan of GOstats recently >> and would love to use a similar approach with other databases. >> >> Very grateful for all your work. >> >> Jose >> >> -- >> Dr. Jose I. de las Heras Email: J.delasHeras at ed.ac.uk >> The Wellcome Trust Centre for Cell Biology Phone: +44 (0)131 6507090 >> Institute for Cell& Molecular Biology Fax: +44 (0)131 6507360 >> Swann Building, Mayfield Road >> University of Edinburgh >> Edinburgh EH9 3JR >> UK >> >> >> -- >> The University of Edinburgh is a charitable body, registered in >> Scotland, with registration number SC005336. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor