THANK You Marco. Jing -----Original Message----- From: Manca Marco (PATH) [mailto:m.manca@maastrichtuniversity.nl] Sent: Tuesday, August 23, 2011 12:32 PM To: Jing Huang; 'bioconductor at r-project.org' Subject: R: organism abbreviations (SPIA package) Dear Jing, please take a look at this page: http://www.genome.jp/kegg/catalog/org_list.html Hope it helps, Marco -- Marco Manca, MD University of Maastricht Faculty of Health, Medicine and Life Sciences (FHML) Cardiovascular Research Institute (CARIM) Mailing address: PO Box 616, 6200 MD Maastricht (The Netherlands) Visiting address: Experimental Vascular Pathology group, Dept of Pathology - Room5.H2.032, Maastricht University Medical Center, P. Debyelaan 25, 6229 HX Maastricht E-mail: m.manca at maastrichtuniversity.nl Office telephone: +31(0)433874633 Personal mobile: +31(0)626441205 Twitter: @markomanka ********************************************************************** *********************************************** This email and any files transmitted with it are confidential and solely for the use of the intended recipient. It may contain material protected by privacy or attorney-client privilege. If you are not the intended recipient or the person responsible for delivering to the intended recipient, be advised that you have received this email in error and that any use is STRICTLY PROHIBITED. If you have received this email in error please notify us by telephone on +31626441205 Dr Marco MANCA ********************************************************************** *********************************************** ________________________________________ Da: bioconductor-bounces at r-project.org [bioconductor-bounces at r-project.org] per conto di Jing Huang [huangji at ohsu.edu] Inviato: marted? 23 agosto 2011 20.44 A: 'bioconductor at r-project.org' Oggetto: [BioC] organism abbreviations (SPIA package) Dear All members, I am analyzing a mouse microarray data by using SPIA package. At the end, I need to input an organism name so the package can recognize it. res=spia(de=HIF1a,all=HIF1a1,organism="hsa",nB=2000,plots=F,beta=NULL, combine="fisher",verbose=F) ?hsa? represent human sample. I am not sure what should I input in for mouse sample. There is a table listed on this website: http://bioinformaticsprb.med.wayne.edu/SPIA I don?t understand these abbreviation. Can somebody help me on this? Many Thanks Jing Oregon [[alternative HTML version deleted]]