GB_ACC to ENTREZ_ID
1
0
Entering edit mode
Reema Singh ▴ 570
@reema-singh-4373
Last seen 10.2 years ago
Hi All The platform for GSE4137 is "Custom cDNA 41,424 clones", and organism is human. I tried the code which you mentioned,but gives me error:- get("AA502230",revmap(org.Hs.egACCNUM)) Error in .checkKeys(value, Rkeys(x), x at ifnotfound) : value for "AA502230" not found Is this error coming becuase i am using it for cDNA platform? Regards
Organism Organism • 1.3k views
ADD COMMENT
0
Entering edit mode
@hotz-hans-rudolf-3951
Last seen 4.1 years ago
Switzerland
This particular error is due to the fact that the "AA502230" (which is the accession for an entry from dbEST) is not cross-referenced to an Entrez GeneId, see: http://www.ncbi.nlm.nih.gov/nucest/2237197?report=genbank Regards, Hans On 01/04/2012 06:22 AM, Reema Singh wrote: > Hi All > > The platform for GSE4137 is "Custom cDNA 41,424 > clones", and organism is human. I tried the code which you > mentioned,but gives me error:- > > get("AA502230",revmap(org.Hs.egACCNUM)) > Error in .checkKeys(value, Rkeys(x), x at ifnotfound) : > value for "AA502230" not found > > Is this error coming becuase i am using it for cDNA platform? > > Regards > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENT

Login before adding your answer.

Traffic: 608 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6