Dear list I'm trying to install preprocessCore but everytime i retrieve the following error message: /usr/bin/ld: cannot find -llapack collect2: ld returned 1 exit status make: *** [preprocessCore.so] Error 1 ERROR: compilation failed for package ‘preprocessCore’ * removing ‘/home/guido/R/x86_64-pc-linux-gnu- library/2.13/preprocessCore’ I suppose that the error is related to the lack of lapack library, but I'm sure that this library is installed and tested on my 64bit machine here is also my sessionInfo output R version 2.13.1 (2011-07-08) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=it_IT.UTF-8 LC_NUMERIC=C [3] LC_TIME=it_IT.UTF-8 LC_COLLATE=it_IT.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=it_IT.UTF-8 [7] LC_PAPER=it_IT.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_2.13.1 tools_2.13.1 thank you very much for any kind of help you could provide to a newbie R user Guido [[alternative HTML version deleted]]

On 01/10/2012 08:26 AM, Guido Leoni wrote: > Dear list > I'm trying to install preprocessCore but everytime i retrieve the following > error message: > > /usr/bin/ld: cannot find -llapack > collect2: ld returned 1 exit status > make: *** [preprocessCore.so] Error 1 > ERROR: compilation failed for package ?preprocessCore? > * removing ?/home/guido/R/x86_64-pc-linux-gnu- library/2.13/preprocessCore? > > I suppose that the error is related to the lack of lapack library, but I'm > sure that this library is installed and tested on my 64bit machine likely this is a problem with your R installation; somewhere between when R was installed and now, lapack has been moved / re-installed. The 'easiest' solution is probably to re-install R, taking the opportunity to update to 2-14. See for instance http://cran.r-project.org/bin/linux/ Martin > > here is also my sessionInfo output > > R version 2.13.1 (2011-07-08) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=it_IT.UTF-8 LC_NUMERIC=C > [3] LC_TIME=it_IT.UTF-8 LC_COLLATE=it_IT.UTF-8 > [5] LC_MONETARY=C LC_MESSAGES=it_IT.UTF-8 > [7] LC_PAPER=it_IT.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] tcltk_2.13.1 tools_2.13.1 > > thank you very much for any kind of help you could provide to a newbie R > user > Guido > > [[alternative HTML version deleted]] > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793