Question: recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
0
gravatar for Anthony Bosco
15.5 years ago by
Anthony Bosco500
Anthony Bosco500 wrote:
To install individual packages on Mac OSX use Terminal (under applications->utilities->terminal). In terminal type in something like: cd /Applications/StartR.app/RAqua.app/Contents/MacOS/ ./R CMD INSTALL /Users/anthonyb/Desktop/ellipse_0.2-12.tgz Regards Anthony >X-Original-To: anthonyb@ichr.uwa.edu.au >Delivered-To: anthonyb@ichr.uwa.edu.au >X-Sender: Message-Id: <p06100502bca2156b493e@[129.85.13.101]> >Date: Tue, 13 Apr 2004 18:16:56 -0400 >To: Marc Salit <salit@nist.gov>, bioconductor@stat.math.ethz.ch >From: Simon Kidd <kidd@mail.rockefeller.edu> >Subject: Re: [BioC] recipe for installing and using Bioconductor with Mac > OS X 10.3 and R GUI 1.9 >X-Virus-Scanned: by amavisd-new >Cc: >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.4 >List-Id: The Bioconductor Project Mailing List ><bioconductor.stat.math.ethz.ch> >List-Unsubscribe: ><https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, > <mailto:bioconductor- request@stat.math.ethz.ch?subject="unsubscribe"> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, > <mailto:bioconductor- request@stat.math.ethz.ch?subject="subscribe"> >Sender: bioconductor-bounces@stat.math.ethz.ch >X-Spam-Checker-Version: SpamAssassin 2.63 (2004-01-11) on > poohbear.ichr.uwa.edu.au >X-Spam-Status: No, hits=-2.9 required=7.0 tests=AWL,BAYES_00,SUBJ_HAS_SPACES > autolearn=no version=2.63 >X-Spam-Level: > >At 5.15pm -0400 13/4/04, Marc Salit wrote: >>Dear Colleagues -- >> >>I've been trying unsuccessfully to use Bioconductor (mostly the >>affy package) on a Mac with OS X 10.3.3, running R with a GUI, >>either 1.8.1 or 1.9.0 beta. I've tried to install Bioconductor with >>getBioC.R, which doesn't work all the way, and also tried to use a >>shell command to install downloaded packages, a la R CMD INSTALL >>/path/to/pkg_version.tar.gz , which also doesn't work all the way >>(stops when it can't find a 'make' command in SHLIB. >> >>Suggestions? Caveats? Will this work? Shall I give up and 'switch' >>back to a PC??? > >Ive installed R1.9 beta from : > ><http: www.economia.unimi.it="" r=""/> > >and then used its gui to install the Bioconductor Affy (and a few >others) packages. Other than some problems with tcltk and limmaGUI >and what I think is a different problem with simpleaffy things have >worked (as much as I can tell). This is with OSX10.3.3, and the >X11 and the developer tools which came with it. >Simon > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- ______________________________________________ Anthony Bosco - PhD Student Institute for Child Health Research (Company Limited by Guarantee ACN 009 278 755) Subiaco, Western Australia, 6008 Ph 61 8 9489 , Fax 61 8 9489 7700 email anthonyb@ichr.uwa.edu.au
gui affy simpleaffy • 422 views
ADD COMMENTlink written 15.5 years ago by Anthony Bosco500
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 263 users visited in the last hour