On 03/21/2012 05:18 PM, Amit Kumar Kashyap wrote: > Hello Steve , > > Thanks for the information . It was helpful to read to README ..I > followed the instructions in README but still unsuccessful to run it > RGraphviz . > > it says > > program can't start because MSVCR80.dll is missing from your computer.. > I am using windows7 and Latest R version 14.2 Hi Amit -- google for MSVCR80.dll, download and install; I'm surprised it's needed. Martin > > > Thanks > > - Amit > > > > On Thu, Mar 15, 2012 at 4:35 PM, Steve Lianoglou< > mailinglist.honeypot at gmail.com> wrote: > >> Hi, >> >> On Thu, Mar 15, 2012 at 11:21 AM, Amit Kumar Kashyap >> <amitonbiochem at="" gmail.com=""> wrote: >>> hello All , >>> I was trying to install RGrphaviz packge in R from : >>> http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html >>> >>> but could not successfully either in Linux or windows >>> >>> In windows it says : >>> *The program can not start because libctd-4.dll missing * >>> * >>> * >>> In Linnux (Ubuntu 11 .10 ) it says : >>> >>> ERROR: configuration failed for package ?Rgraphviz?v .. >>> >>> Can anyone please explain what exactly the problem : Is tha correct >>> version of the program .. ? or do we need >>> to additional configuration setting ? >>> >>> I Google it but the discussion posts are quite old .. so please help me >> >> Did you read this? >> >> http://www.bioconductor.org/packages/release/bioc/readmes/Rgraphviz /README >> >> Also, you might consider updating your version of the R to the newest ... >> >> -steve >> >>> >>> Thanks >>> >>> Regards >>> -Amit Kumar >>> >>> >>> >>> >>> >>>> source("http://bioconductor.org/biocLite.R") >>> BioC_mirror = http://bioconductor.org >>> Change using chooseBioCmirror(). >>> Warning messages: >>> 1: In safeSource() : Redefining ?biocinstall? >>> 2: In safeSource() : Redefining ?biocinstallPkgGroups? >>> 3: In safeSource() : Redefining ?biocinstallRepos? >>>> biocLite("Rgraphviz") >>> Using R version 2.13.1, biocinstall version 2.8.4. >>> Installing Bioconductor version 2.8 packages: >>> [1] "Rgraphviz" >>> Please wait... >>> >>> Installing package(s) into >> ?/home/amit/R/x86_64-pc-linux-gnu-library/2.13? >>> (as ?lib? is unspecified) >>> trying URL ' >>> >> http://bioconductor.org/packages/2.8/bioc/src/contrib/Rgraphviz_1.3 0.1.tar.gz >>> ' >>> Content type 'application/x-gzip' length 730304 bytes (713 Kb) >>> opened URL >>> ================================================== >>> downloaded 713 Kb >>> >>> * installing *source* package ?Rgraphviz? ... >>> checking for gcc... gcc >>> checking for C compiler default output file name... a.out >>> checking whether the C compiler works... yes >>> checking whether we are cross compiling... no >>> checking for suffix of executables... >>> checking for suffix of object files... o >>> checking whether we are using the GNU C compiler... yes >>> checking whether gcc accepts -g... yes >>> checking for gcc option to accept ISO C89... none needed >>> checking how to run the C preprocessor... gcc -E >>> checking for grep that handles long lines and -e... /bin/grep >>> checking for egrep... /bin/grep -E >>> checking for ANSI C header files... yes >>> checking for sys/types.h... yes >>> checking for sys/stat.h... yes >>> checking for stdlib.h... yes >>> checking for string.h... yes >>> checking for memory.h... yes >>> checking for strings.h... yes >>> checking for inttypes.h... yes >>> checking for stdint.h... yes >>> checking for unistd.h... yes >>> checking for stdbool.h that conforms to C99... yes >>> checking for _Bool... yes >>> checking for whether compiler has bool... yes >>> configure: No --with-graphviz option was specified. Trying to find >> Graphviz >>> using other methods. >>> checking for pkg-config... /usr/bin/pkg-config >>> Package libgvc was not found in the pkg-config search path. >>> Perhaps you should add the directory containing `libgvc.pc' >>> to the PKG_CONFIG_PATH environment variable >>> No package 'libgvc' found >>> configure: pkg-config was not able to find the Graphviz library libgvc. >>> This either indicates that Graphviz is old or that something is wrong. >>> Verify Graphviz is installed and that PKG_CONFIG_PATH is correct. >>> checking for dotneato-config... no >>> configure: dotneato-config not found in PATH. >>> configure: Using default directory /usr/local, consider specifiying >>> --with-graphviz >>> configure: error: /usr/local/bin/dot not found. Check Graphviz >>> installation. >>> ERROR: configuration failed for package ?Rgraphviz? >>> * removing ?/home/amit/R/x86_64-pc-linux-gnu- library/2.13/Rgraphviz? >>> >>> The downloaded packages are in >>> ?/tmp/RtmpyHrdSv/downloaded_packages? >>> Warning message: >>> In install.packages(pkgs = pkgs, repos = repos, ...) : >>> installation of package 'Rgraphviz' had non-zero exit status >>> >>> [[alternative HTML version deleted]] >>> >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> >> >> -- >> Steve Lianoglou >> Graduate Student: Computational Systems Biology >> | Memorial Sloan-Kettering Cancer Center >> | Weill Medical College of Cornell University >> Contact Info: http://cbio.mskcc.org/~lianos/contact >> > > [[alternative HTML version deleted]] > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. 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