Hi, I have been using Annotations tools without problems but I just realized some days ago that my HTML outputs have the GO column empty. I reinstalled both devel and release version of Annotations (libName=Annotation) and it happend with both. Here is the code, for example: library(annaffy) library(affy) load('mydata') anncols<-aaf.handler()[c(1:4,7:8, 12:13)] anntable<-aafTableAnn(geneNames(mydata.gcrma)[1:100],'hgu133a',anncols ) saveHTML(anntable[1:100],'lixo.html') Does somebody have any idea what it is going on ? Please! platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status beta major 1 minor 9.0 year 2004 month 03 day 22 language R -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New York, NY 10021 phone: 1-212-327-8186 fax: 1-212-327-7422

>library(annaffy) >library(affy) >load('mydata') >anncols<-aaf.handler()[c(1:4,7:8, 12:13)] >anntable<-aafTableAnn(geneNames(mydata.gcrma)[1:100],'hgu133a',anncol s) >saveHTML(anntable[1:100],'lixo.html') What is the version number of the hgu133a data package? annaffy may have probelem with data package >= 1.5.0 due to changes in the structure of the GO environment. > >Does somebody have any idea what it is going on ? Please! > >platform i686-pc-linux-gnu >arch i686 >os linux-gnu >system i686, linux-gnu >status beta >major 1 >minor 9.0 >year 2004 >month 03 >day 22 >language R > > >-- >Mayte Suarez Farinas >The Rockefeller University >1230 York Avenue, Box 212 >New York, NY 10021 >phone: 1-212-327-8186 >fax: 1-212-327-7422 > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084