Question: quick question : creating ideogram for a in-house genome
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gravatar for Abhishek Pratap
6.7 years ago by
Abhishek Pratap400 wrote:
worked cleanly..I can see couple of hours of plotting being saved by ggbio specially for our structural variation stuff.. Thanks for great support and writing awesome documentation. I am sure I will have more questions later. -Abhi On Wed, Jan 9, 2013 at 9:31 AM, Abhishek Pratap <apratap@lbl.gov> wrote: > GMorning > > On Tue, Jan 8, 2013 at 10:42 PM, Tengfei Yin <yintengfei@gmail.com> wrote: > >> Hi Abhi, >> >> Do you wan to cytoband or not? do you want it to be embedded into tracks? >> > >cytoband not needed. I am not sure what you mean by embedded into tracks. > >> >> if not, autoplot,Seqinfo could be used for that purpose, otherwise, >> construct the GRanges with gieStain and name columns, I think it should be >> in the ideogram chapter, function plotIdeogram would work for that purpose. >> > > I will try this today and get back > > Thanks! > -Abhi > >> Tengfei >> >> >> On Tue, Jan 8, 2013 at 5:26 PM, Abhishek Pratap <apratap@lbl.gov> wrote: >> >>> Hi Tingfei >>> >>> Can you point me to an example for creating an ideogram for a genome >>> that doesnt exist in UCSC. >>> >>> Thanks! >>> -Abhi >>> >>> >> >> >> -- >> Tengfei Yin >> MCDB PhD student >> 1620 Howe Hall, 2274, >> Iowa State University >> Ames, IA,50011-2274 >> >> >> > [[alternative HTML version deleted]]
ideogram • 392 views
ADD COMMENTlink written 6.7 years ago by Abhishek Pratap400
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