Hi Hervé, thanks for the reply. Indeed, at first I named my genome package according to the nomenclature but I didn't realize that the underscore was causing the malfunctioning. I changed the name to "BSgenome" and apparently I made things worse. I'll give it a try following your advice. Best, Sara On Fri, Jan 18, 2013 at 9:09 PM, Hervé Pagès <hpages@fhcrc.org> wrote: > Hi Sara, > > I'm not sure what the problem is but I would suggest you try renaming > your package first. I think having an _ (underscore) in the name is not > supported and is likely to cause problems. > > Cheers, > H. > > > On 01/16/2013 07:26 AM, Sara Castelletti wrote: > >> Hi everyone, >> >> I have been trying to create a BSgenome data package for maize (as it is >> not available in the BSgenome package). >> I have prepared the seed file and downloaded the fasta sequences and then >> I >> proceeded to forge the genome. >> >> After typing >> >> R CMD check "path/to/my/tarball" >> >> the installation failed and the error file goes like this (sorry, it's in >> French, but I think the translation of the error message is "node stack >> overflow") >> >> * installing *source* package 'BSgenome_zm' >> ** R >> ** inst >> ** preparing package for lazy loading >> Error in match.fun(FUN) : pile de noeuds dborde vers le haut >> ERROR: lazy loading failed for package 'BSgenome_zm' >> * removing >> >> I'd appreciate some help to understand what's wrong. >> Thanks in advance. >> >> [[alternative HTML version deleted]] >> >> ______________________________**_________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https: stat.e="" thz.ch="" mailman="" listinfo="" bioconductor=""> >> Search the archives: http://news.gmane.org/gmane.** >> science.biology.informatics.**conductor<http: news.gmane.org="" gmane="" .science.biology.informatics.conductor=""> >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpages@fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]]