Entering edit mode
Dear all,
The new Ensembl marts for release 70 are live on www.ensembl.org.
You can change your host to access our most recent data:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL",
host="www.ensembl.org", path="/biomart/martservice")
The following improvements and modifications have been made :
Ensembl Genes 70 :
Updated Human assembly to GRCh37.p10, Mouse (Mus musculus)
assembly to GRCm38.p1, Rat (Rattus norvegicus) assembly to Rnor_5.0
and updated Cat (Felis catus) to Felis_catus_6.2.
Added genomeRNAi filters and attributes for Human and
Fruitfly.
An example identifier has been added for all the RNAseq
attributes.
Ensembl Variation 70:
Updated the human somatic variation database to COSMIC 61
data.
Updated Mouse and Cow to dbSNP 137.
"Minor allele frequency" and "Minor allele count" have been
renamed to "1000 genomes global MAF" and "1000 genomes global MAC".
Variation datasets have been renamed to "short variation (SNPs
and indels)".
Variation sources and Variation synonyms have been updated and
reorganised in the filter and attribute sections.
Ensembl Regulation 70:
Added Binding motifs for Human and Mouse.
New Ensembl Regulatory Features IDs list limit filter in the
"Regulatory features" section,
Vega 50 :
Updated Human assembly to GRCh37.p10 and Mouse assembly to
GRCm38.p1
A complete list of the changes in release 70 can be found at
http://www.ensembl.org/info/website/news.html
Best Regards,
Thomas
--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK
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