Regarding Tcltk and CDF error
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Entering edit mode
SAURIN ★ 1.1k
@saurin-799
Last seen 7.2 years ago
Dear Bioconductor, I have installed R-1.9.1 on my AMD 64 remotely..! [ imp. remotely] i have installed all bioconductor pkgs except Rgraphviz and Rhdf5 !! I am running R scripts and..I have following errors : > library(tcltk,warn.conflicts = FALSE); Error in fun(...) : no display name and no $DISPLAY environment variable Error: .onLoad failed in loadNamespace Error in library(tcltk, warn.conflicts = FALSE) : package/namespace load failed > > library(affy,warn.conflicts = FALSE); > library(affyPLM,warn.conflicts = FALSE); > library(simpleaffy,warn.conflicts = FALSE); Creating a new generic function for "plot" in "simpleaffy" Welcome to 'simpleaffy' Produced by The Paterson Institute for Cancer Research and funded by CANCER RESEARCH UK. http://bioinformatics.picr.man.ac.uk/simpleaffy mailto: microarray@picr.man.ac.uk > .............code........ > abatch <- read.affybatch(filenames = my.filenames,phenoData = my.pheno); > abatch Error in cdfName(object) : No direct or inherited method for function "cdfName" for this call AffyBatch object size of arrays=712x712 features (15849 kb) cdf=HG-U133A (??? affyids) number of samples=4 Error in cdfName(object) : No direct or inherited method for function "cdfName" for this call In addition: Warning message: missing cdf environment ! in: show(structure(list(), exprs = structure(c(159.5, 14118.5, 192.5, Thank you all, Saurin ADD COMMENT 0 Entering edit mode @james-wettenhall-153 Last seen 7.2 years ago Hi, The Bioconductor list might not be the best place to report problems loading the tcltk package. Maybe R-help? Certainly the error about no$DISPLAY environment variable set seems pretty clear. Is there any reason why you can't set your DISPLAY or use an Xterm / SSH or whatever with automatic X11 forwarding? Regards, James On Tue, 22 Jun 2004, SAURIN wrote: > > library(tcltk,warn.conflicts = FALSE); > > Error in fun(...) : no display name and no $DISPLAY environment variable > Error: .onLoad failed in loadNamespace > Error in library(tcltk, warn.conflicts = FALSE) : > package/namespace load failed ADD COMMENT 0 Entering edit mode Dear BioC, thatnk you Dr. Wettenhall, i got that error under control...its siple thing ! thank you, Saurin --- James Wettenhall <wettenhall@wehi.edu.au> wrote: > Hi, > > The Bioconductor list might not be the best place to report > problems loading the tcltk package. Maybe R-help? Certainly > the error about no$DISPLAY environment variable set seems > pretty clear. Is there any reason why you can't set your > DISPLAY or use an Xterm / SSH or whatever with automatic X11 > forwarding? > > Regards, > James > > > On Tue, 22 Jun > 2004, SAURIN wrote: > > library(tcltk,warn.conflicts = FALSE); > > > > Error in fun(...) : no display name and no \$DISPLAY environment variable > > Error: .onLoad failed in loadNamespace > > Error in library(tcltk, warn.conflicts = FALSE) : > > package/namespace load failed > >