Hi Yasin, I got it. You need go to http://www.bioconductor.org/packages/devel/bioc/html/cleanUpdTSeq.html to download the package source and install as local package. Or you install the develop version R and install it. If you still have any trouble with that, please let me known. Yours sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 On 8/4/13 9:32 PM, "Kaymaz, Yasin" <yasin.kaymaz at="" umassmed.edu=""> wrote: >Hi Jianhong, > >I tried that one as well. Did not work. I also tried to install manually >but got the same result. I do not know what is wrong. > >install.packages("/home/kaymazy/Downloads/cleanUpdTSeq") >Warning message: >package ?/home/kaymazy/Downloads/cleanUpdTSeq? is not available (for R >version 2.15.3) > >Yasin > >On 08/04/2013 08:34 PM, Ou, Jianhong wrote: >> Hi Yasin, >> >> Did you tried >> >> biocLite("cleanUpdTSeq", type="source") >> >> Best! >> >> Your sincerely, >> >> Jianhong Ou >> >> On Aug 4, 2013, at 7:59 PM, Yasin Kaymaz <yasin.kaymaz at="" umassmed.edu=""> >>wrote: >> >>> Dear Sarah, >>> >>> I would like to install and use your package, however; it keeps >>>telling me that the package is not available regardless of R version. I >>>tried to install it on R-2.14, R-2.15 and R-3.1 as well. Non of them >>>worked. >>> >>> I would be happy if you suggest a solution to this. >>> >>> Thanks, >>> Yasin >>> >>> >>> source("http://bioconductor.org/biocLite.R") >>> Your Bioconductor is out-of-date, upgrade to version 2.12 by following >>> instructions at http://bioconductor.org/install. >>> Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help >>>> biocLite("cleanUpdTSeq") >>> BioC_mirror: http://bioconductor.org >>> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15. >>> Installing package(s) 'cleanUpdTSeq' >>> Warning message: >>> package ?cleanUpdTSeq? is not available (for R version 2.15.3) >>> >>> -- >>> Yasin Kaymaz >>> PhD Student >>> Bioinformatics & Integrative Biology >>> Graduate School of Biomedical Sciences >>> University of Massachusetts Medical School >>> > >-- >Yasin Kaymaz >PhD Student >Bioinformatics & Integrative Biology >Graduate School of Biomedical Sciences >University of Massachusetts Medical School >