Hi Nazia, On 09/18/2013 10:04 PM, Nazia Ahmad [guest] wrote: > > Hello sir > > I want to search binding sites for multiple TFs simultaneously from a set of sequences.Can N() work for it.If yes then how?If no then kindly suggest me any other way to do this. If by "simultaneously" you mean you want to be able to match more than one Position Weight Matrix to the genome at a time, then no, matchPWM() doesn't support this. It can only match one PWM at a time. To match multiple PWMs, just use a loop. Cheers, H. > > -- output of sessionInfo(): > > none > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319