Data file request
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@prabhakar-ghorpade-6464
Last seen 10.3 years ago
Hi,    Can You give me one microarray file (Image, .DAT, .CEL and other ) from agilent data for trial analysis? I would be nice if article about is published and detailed description is available to facilitate analysis. Did anyone has diagnostic array file too? Thanks. Kind regards, Prabhakar Dr. Ghorpade Prabhakar B. PhD Scholar ( Veterinary Biochemistry), IVRI, Izatnagar, Bareilly, U.P., India [[alternative HTML version deleted]]
Microarray Microarray • 978 views
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@steve-lianoglou-2771
Last seen 22 months ago
United States
Hi, On Mon, Mar 24, 2014 at 12:09 PM, prabhakar ghorpade <prabhakar_ghorpade at="" yahoo.co.in=""> wrote: > Hi, > Can You give me one microarray file (Image, .DAT, .CEL and other ) from agilent data for trial analysis? I would be nice if article about is published and detailed description is available to facilitate analysis. Did anyone has diagnostic array file too? Thanks. You can search GEO to get datasets (and accompanying publications) that fit most criteria you are after, so give that a go: http://www.ncbi.nlm.nih.gov/geo/ Once you've identified a study you'd like to work with, the GEOquery package might help with its download and import into bioconductor: http://www.bioconductor.org/packages/release/bioc/html/GEOquery.html Lastly, the ExperimentData repository we have might be helpful: http://bioconductor.org/packages/release/BiocViews.html#___ExperimentD ata HTH, -steve -- Steve Lianoglou Computational Biologist Genentech
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Hi Prabhakar, You can try this one from GEO: http://0-www.ncbi.nlm.nih.gov.elis.tmu.edu.tw/geo/query/acc.cgi?acc=GS E33437 Hope it helps, Best, Zeynep On Mon, Mar 24, 2014 at 9:16 PM, Steve Lianoglou <lianoglou.steve@gene.com>wrote: > Hi, > > On Mon, Mar 24, 2014 at 12:09 PM, prabhakar ghorpade > <prabhakar_ghorpade@yahoo.co.in> wrote: > > Hi, > > Can You give me one microarray file (Image, .DAT, .CEL and other ) > from agilent data for trial analysis? I would be nice if article about is > published and detailed description is available to facilitate analysis. Did > anyone has diagnostic array file too? Thanks. > > You can search GEO to get datasets (and accompanying publications) > that fit most criteria you are after, so give that a go: > > http://www.ncbi.nlm.nih.gov/geo/ > > Once you've identified a study you'd like to work with, the GEOquery > package might help with its download and import into bioconductor: > > http://www.bioconductor.org/packages/release/bioc/html/GEOquery.html > > Lastly, the ExperimentData repository we have might be helpful: > > http://bioconductor.org/packages/release/BiocViews.html#___Experimen tData > > HTH, > -steve > > -- > Steve Lianoglou > Computational Biologist > Genentech > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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