Question: Access to BiocGenerics 0.11.4 package
0
gravatar for gregory voisin
5.1 years ago by
Canada
gregory voisin430 wrote:
Hello , I try to download the BiocGenerics 0.11.4 package, directly on the website: http://bioconductor.jp/packages/3.0/bioc/html/BiocGenerics.html but I have a message : Server problem. How to get this package Thanks for your help. [[alternative HTML version deleted]]
biocgenerics • 1.3k views
ADD COMMENTlink modified 5.1 years ago by James W. MacDonald51k • written 5.1 years ago by gregory voisin430
Answer: Access to BiocGenerics 0.11.4 package
0
gravatar for James W. MacDonald
5.1 years ago by
United States
James W. MacDonald51k wrote:
Hi Gregory, You get it the same way you get any BioC package: source("http://www.bioconductor.org/biocLite.R") biocLite("BiocGenerics") But note that this is a very basic level package that is imported by or depended upon by a huge number of packages. So if you have installed Bioconductor (following the usual recommendations, natch), you will already have this package. Best, Jim On Fri, Sep 5, 2014 at 11:45 AM, gregory voisin <voisingreg at="" yahoo.fr=""> wrote: > Hello , > I try to download the BiocGenerics 0.11.4 package, directly on the > website: > > http://bioconductor.jp/packages/3.0/bioc/html/BiocGenerics.html > > > but I have a message : Server problem. > > How to get this package > > Thanks for your help. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]]
ADD COMMENTlink written 5.1 years ago by James W. MacDonald51k
Hi James, the installation of goseq needs some dependencies and produces this error, when I try to install it Error : package ?BiocGenerics? 0.10.0 was found, but >= 0.11.3 In R, with bioClite , installation of BiocGenerics, install an "old" version ( 0.8.0) In fact , I would like include and use the most recent package ( BiocGenerics) in Unix pipeline, with a personal library. thanks Le Vendredi 5 septembre 2014 11h55, James W. MacDonald <jmacdon at="" uw.edu=""> a ?crit : Hi Gregory, You get it the same way you get any BioC package: source("http://www.bioconductor.org/biocLite.R") biocLite("BiocGenerics") But note that this is a very basic level package that is imported by or depended upon by a huge number of packages. So if you have installed Bioconductor (following the usual recommendations, natch), you will already have this package. Best, Jim On Fri, Sep 5, 2014 at 11:45 AM, gregory voisin <voisingreg at="" yahoo.fr=""> wrote: Hello , >I try to download the BiocGenerics 0.11.4 package, directly on the website: > >http://bioconductor.jp/packages/3.0/bioc/html/BiocGenerics.html > > >but I have a message : Server problem. > >How to get this package > >Thanks for your help. > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor at r-project.org >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]]
ADD REPLYlink written 5.1 years ago by gregory voisin430
Hi, On Fri, Sep 5, 2014 at 9:31 AM, gregory voisin <voisingreg at="" yahoo.fr=""> wrote: > Hi James, > > the installation of goseq needs some dependencies and produces this error, when I try to install it > Error : package ?BiocGenerics? 0.10.0 was found, but >= 0.11.3 > > > > > In R, with bioClite , installation of BiocGenerics, install an "old" version ( 0.8.0) > > In fact , I would like include and use the most recent package ( BiocGenerics) in Unix pipeline, with a personal library. It sounds like you must be using an old version of R, but we can't tell. Please include the full transcript of your R session that you ran when trying to install this package as well as the output of sessionInfo() after the install fails. If you are using the latest version of R (3.1.1) and have installed all of you bioconductor packages via `biocLite`, everything should be going smoothly. HTH, -steve -- Steve Lianoglou Computational Biologist Genentech
ADD REPLYlink written 5.1 years ago by Steve Lianoglou12k
Ok, i will try to the last version of R. Thanks for your help. Le Vendredi 5 septembre 2014 12h37, Steve Lianoglou <lianoglou.steve at="" gene.com=""> a ?crit : Hi, On Fri, Sep 5, 2014 at 9:31 AM, gregory voisin <voisingreg at="" yahoo.fr=""> wrote: > Hi James, > > the installation of goseq needs some dependencies and produces this error, when I try to install it > Error : package ?BiocGenerics? 0.10.0 was found, but >= 0.11.3 > > > > > In R, with bioClite , installation of BiocGenerics, install an "old" version ( 0.8.0) > > In fact , I would like include and use the most recent package ( BiocGenerics) in Unix pipeline, with a personal library. It sounds like you must be using an old version of R, but we can't tell. Please include the full transcript of your R session that you ran when trying to install this package as well as the output of sessionInfo() after the install fails. If you are using the latest version of R (3.1.1) and have installed all of you bioconductor packages via `biocLite`, everything should be going smoothly. HTH, -steve -- Steve Lianoglou Computational Biologist Genentech [[alternative HTML version deleted]]
ADD REPLYlink written 5.1 years ago by gregory voisin430
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