Order of input files in Shearwater
0
0
Entering edit mode
Asma rabe ▴ 290
@asma-rabe-4697
Last seen 6.4 years ago
Japan

Hi Bioconductors,

Does the order of test and control bam files matters in shearwater??

How to specify that a certain file is either test or control file?

I defined test and control files as in shearwater manual as:

files<-c("test.bam","control.bam")

but in output vcf file it seems that REF and ALT columns were flipped over, so is it due to order of files?or due to another reason?

Thank you very much.

deepSNV • 982 views
ADD COMMENT

Login before adding your answer.

Traffic: 369 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6