metagenomeSeq error using cumNormStatFast
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noelle.noyes ▴ 30
@noellenoyes-7241
Last seen 5.6 years ago
United States

Another error I am getting while running metagenomeSeq.  It occurs when running cumNormStatFast on an MRexperiment object.

"Error in cumNormStatFast(obj) : Warning empty sample"

I checked the count matrix in the MRexperiment object, and I don't have any samples with 0 counts.  Any suggestions?  Thanks much.

 

 

metagenomeSeq • 1.5k views
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@joseph-nathaniel-paulson-6442
Last seen 4.5 years ago
United States

Hi Noelle,

The error message should be replaced with empty or single valued sample. I would recommend either removing the sample or calling cumNormStat in place of cumNormStatFast.

obj = cumNorm(obj,p=cumNormStat(obj))

should fix it.

 

Thanks!

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