I installed "Lumi" on R 3.0.3 with bioconductor version 2.13. But when I load the package using command
> library(lumi)
It is giving me following error:
Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
In addition: Warning message:
replacing previous import by ‘nleqslv::nleqslv’ when loading ‘lumi’
Error: package or namespace load failed for ‘lumi’
I have checked the previous posts regarding discussions related to this but I have checked the version update option as well but I am still unable to figure out the error.
If I recall correctly, RSQLite's codebase has recently been the target of some spring cleaning from Hadley, so it might be a version mismatch between the version of RSQLite that your (old!) version of lumi requires and what the latest version of RSQLite provides, although we can't tell for sure as you did not provide the output of sessionInfo().
Your best (and easiest (and highly recommended)) bet would be to simply upgrade to the latest version of R and Bioconductor and install these there.
The other option is to find the version of RSQLite that was "current" when the version of lumi that you are using was released. Other (newer) packages may break, however, if they depend on RSQLite 1.0 functionality (assuming you've installed all of your packages using biocLite, then the packages at most risk at breaking by installing an older version of RSQLite would be the ones you've installed from elsewhere (ie. CRAN)).
