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Normalization and background correction issues for specific Illumina data sets using limma R package
updated 6.5 years ago by
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Recent ...
Replies
Comment: Handling of missing values in limma
by
AyHi
•
0
Thank you, Gordon, for your reply.
I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
•
0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments
by
ATpoint
★
1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Comment: champ.SVD() error, assumes standard class() function will return single string
by
Basti
▴
280
What is class(`yourbeta`) ?
Answer: methylated/unmethylated media threshold (EPIC assay)
by
ramonfallon
•
0
OK, so the closest I could get as an answer to this was from a Kasper Hansen Illumina video from 2013
Where he says there have been some d…
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